I chose option 1(continue) after I beat the suicide mission, but a few of my squad-mates died

. Then I reloaded a save I made before going through the Omega 4 Relay so that I could have them all alive. When I beat it again, it didn't ask me which option to choose. Does this mean when I import my character into ME3 it will think some of my squad mates are dead, even if I went back and saved them? Also, after I saved all my squad-mates, I played the dlc content. Since I played the dlcs after the suicide mission, will it import the progress I made in the dlcs?
In other words, once you select option 1, will me3 only import what you have done before selecting option 1?
Much thanks in advance! I don't know, but I have a feeling I made this question as confusing as possible...