Sashimi_taco wrote...
That would be the most stupid plot point. Shepard is well... Shepard. And to have the main character be indoctrinated would take the control out of the players hands which would simply ruin the game. The game is about choices, being indoctrinated would ruin that.
Did Isaac being insane ruin Dead Space 2? (Hint: Sten)
Frankly, if it's a Saren-esque process, and Shepard recognizes he's becoming just like Saren (technically, he's a rogue Spectre due to working with Cerberus, he's recruiting armies of Krogan, possibly Rachni and possibly Geth, has cyberntic implants, etc.), then I think it'll give Shepard loads of needed character. The choice would then be "How do I deal with the fact I'm slowly losing myself?"
Or "How do I find a cure? Is there one?"
Also, the fact that the Geth can't be force-fully indoctrinated may actually show that Shepard's implants will be his saving grace FROM indoctrination. It could work out in a few different ways, depending on how the reaper tech was implanted, and how much of it actually is reaper tech, ranging from none to all.