Thompson family wrote...
Upon reflection, there are at least a few members of Sheps circle who could be targets for TIM besides Liara. Liara is the only one who can’t die in any playthrough, but the issues raised in other recruitment and loyalty missions are still there, presumably..
As several post authors have pointed out, personal scores shouldn’t matter when the Reapers are invading, but there as some key players here who could hold the balance on things that matter.
1. We already know Cerberus will try to kill MORDIN (or his successor) and a Krogan who’s very important to WREX (or his successor); so important that Wrex (whomever) himself will fly into a combat zone to help rescue her.
Liara is my Shep’s LI. If TIM tries to kill her, Shep will get revenge -- but if he kills Wrex, my Shep’s going to be mad as h***.
2. TALI’s data from Halestrom and the information on her father’s experiments. Tali was willing to go into exile to keep those experiments becoming public. I can see TIM and Adm. Xen cooperating on this one, and Tali trying to stop them. So, Renegades, you might get the chance to really abuse Tali again, assuming she survived.
This also has implications for LEGION if they’re alive, since Cerberus wants to control Geth. We see that in Overlord, too.
3. KASUMI, if she didn’t destroy the Greybox, will have information very embarrassing to the Alliance. TIM will either want that or want it destroyed.
4. MIRANDA, on the Paragon path, resigns from Cerberus. She was as close to a trusted lieutenant as TIM ever had, and TIM can get to her through her sister. If she’s dead, well, that’s that.
Here's a few more tidbits that could be worth pondering:
It's very possible that TIM learned how to resist indoctrination via the same secreted method that Saren barks about in the first game, how he, "did what they wanted and they allowed him to have free will."
Listening to how TIM talks the way he talks, referencing humanity as, "they." or "them," when referencing humanity as a whole. But when referencing Cerberus, refers to it as "we," and "the galaxy's best hope for survival," which is similar to what Saren believed the Reapers to be.
EDI herself being, well I guess you could say, "part reaper," which she mentions when stressing a topic about the Geth with Legion and she mentions that some of Soverign went into making her. This, in theory could also explain a bit about the facial scaring of the Renegade Shep, as he himself may have been rebuilt with some of the same components. This could also explain why he's able to resist the reaper artifact. This would also help to explain about why TIM brought shep back, and wanted him, "exactly how he was before," and wouldn't allow for neural control implants. It's possible that TIM was supposed to be a moderator between Shep and the Reapers
Now... if you didn't sweep the Heretics on Legions mission back into the fold, this may actually have been a beneficial move towards the geth in the future. Meaning that the "destroyed" geth may be able to rebuild, as "isolated programs will take longer to acess the primary hub," and "we comunicate at faster than light," so they may've been able to warn of infected hubs. Which I supposed would work for either side.
This may prove valuable going forward, as Rael's research, as well as Project Overlord, were both methods attempting to control the Geth, and they may takeover the heretics.
Probably another good thing done via a Renegade path would be Morinth herself. As she herself can dominate individuals, which may prove invaluable against the reaper threat, and may lead to a method of breaking their control, but this is mostly conjecture.
Mordin himself may have a method to fight indoctrination, as he created a seeker counter-measure.
Garrus was healed on a cerberus vessel, who knows what they did to him.
The Baterian's would probably give their left arm after what I did to them... But turn about is fair play! I just... did it on a larger scale. (reference to ME1 and ME2 DLC)
... Now...... to take an opposite direction; during Liara's Hardening, she was in contact with Cerberus a great deal. They used this to track the SB, and then there's a possibility that she herself has become indoctrinated, or "partially." Even if you've previously romanced her it takes a good ammount of effort to get her interested in you again, which shows that she's hiding something. Now, if she is indoctrinated this could be a strong possible reason why she's been after the Shadow Broker, and be using Feron as a cover, which would be a significant boon for Cerberus as they provided the intel on where to find him.
Basically Liara being a double-agent, similar to Miranda was, but less open about it.
Her whole helping shep could actually be a cover so the reapers could infact get even closer, maybe gather genetic material from him to do who knows what. Which would also explain after getting the SB base, why she doesn't stay with you, as maybe an attempt to fight off the indoctrination.