I don´t know if it´s wise to put new speculations in this thread by the flamewar that´s going on here, but I would like to add to the stuff the OP said.
Organics undergoing indoctrination may complain of headaches and buzzing
or ringing in their ears. As time passes, they have feelings of "being
watched" and hallucinations of "ghostly" presences. Ultimately, the
Reaper gains the ability to use the victim's body to amplify its
signals, manifesting as "alien" voices in the mind.
So as stated in the OP, this codex entry fits perfectly the TIM situation at the end. You got alien voices, headaches and buzzing or ringing in your ears. It is pretty obvious to me that the Reapers are trying to indoctrinate Shepard at this state, since they are controlling TIM and TIM tries to convince you of his belives. Shepards strong will and the fact that we already know that TIM is indoctrinated leaves this strategy doomed to fail though.
When you go up to the Starchild, Shepard gets out of character and partly believes what the child says without questioning it, and he gets more unsure about his believes ("I don´t know."). Again this fits the codex entry:
The Reaper's resulting control over the limbic system leaves the victim highly susceptible to its suggestions.
I am sure that this is another attempt to indoctrinate him, whether the kid is real or not. Since the TIM strategy failed, they try a different approach and it works a lot better now. So what I´m saying is that even if you take the plot for real, the child conversation is an indoctrination attempt, too.
So up to this point it still makes all sense in my opinion, even if it´s not all a hallucination in the end. The problem with the end sequences stays though... They don´t fit any logical explanation that I can think of, if you take the ending for real. In addition we have then to assume that the breathing scene takes place on the citadel, despite the fact that it´s blowing up completely.
Someone even pointed out that, if you have a low EMS, your Squadmates die while charging to the beam, you can definitly see there bodies. After the landing of the Normandy they came out after Joker alive and healthy. This just can´t be real! And no, I refuse to believe that BW would f**k up that badly!
Modifié par Heg28, 11 mai 2012 - 11:33 .