Yeah I do...and I think those who don't like the Chantry, are going to suddenly have a newfound appreciation for the Chantry. 
But seriously, if they develop a major plot dealing with the Qunari, they will have to. Just like if we go to Tevinter, not all mages there are going to be portrayed as bloodthirsty magisters.
I feel:
-They first showed the basics of the world (DAO)
-Then they showed how gone to crap things in Thedas are/can be at their worst, with mages/templars, Chantry, Tevinter, Qunari, more (DA2)
-Then they softened mages and templars by comparing them to Chantry oppression/control (DAI)
-Then they softened Chantry (and may continue to in the next game) by comparing it to Tevinter
But:
-Next they'll soften Tevinter by comparing it to Qunari and more
-*AND* at some point, they'll even soften Qunari by comparing it to other unknown forces, dilemmas, etc. They may, in some way, illustrate how Qunari, to whatever extent, may be needed/may have been needed for something else, and that there may be compelling reasons for at least your character to align with it to some extent.
So far, Bioware can scratch off Templars, Mages, Grey Wardens, and Chantry. They got it covered. They have material there for even the original haters of the Chantry to go "Okay, I understand that it has a role." at least.
I'm concerned about Bioware doing that for Qunari. That's where I draw my line. It disgusts me sooo much.