The Collector Base decision should have been one of the most morally ambiguous choices in the trilogy. In fact, during the Suicide Mission, your squad mates make compelling arguments for keeping or destroying it. The stupidity begins after the credits. Suddenly, your entire crew condemns your decision to preserve the base, even Legion and Mordin, the two characters who offered the best reasons for keeping it. The idiocy also exists in Shepard's reason for destroying it: it's an abomination, and whatever technology that could be found there isn't worth it. The place is tainted, so we must kill it with fire. This is a purely emotional argument. No logic is present here. And yet, BioWare wanted us to feel bad for keeping it. Paragon is good and Renegade is evil. It's as simple as that.
Thankfully, Mass Effect 3 actually kind of ignored this insanity. I think morality was handled quite well, and the hypocrisy of Shepard's pro-destroy argument is exposed in the form of the Human-Reaper War Assets. Whether or not you keep the base, the galaxy incorporates the Human-Reaper remains into the Crucible, providing it with either tremendous raw power (the Reaper Heart), or tremendous computing power (the Reaper Brain). Well, what do you have to say about that, Shepard? Isn't the Human-Reaper an abomination? Shouldn't you be appalled that the galaxy benefits from using a machine corpse made up of thousands of humans? Have you let fear compromise who you are? Have you sacrificed the soul of your species, perhaps all species?
Yeah... this was a bit of a rant. At least the ME3 ending doesn't judge your choices. My canon Shepard is mostly Paragon, but I think keeping the base is the smart thing to do. The threat of indoctrination is real, but it can be managed if you're careful. The Crucible engineers are able to do it. I also wish that Miranda didn't suddenly get so emotional about the decision, when she was one of the most pragmatic characters in the game up until that moment. Something went horribly wrong in the writing at the very end of Mass Effect 2, and it's actually kind of worse than Mass Effect 3's case.
And I still don't know what the decision actually means. If I keep it, am I saying that the Illusive Man can try to build his own Reaper? Is that why it's so evil? Is that why the game condemns me? Is that why destroying it should be the only answer? Is that why Miranda thinks that it's going too far? If this is the case, then I actually do approve of destroying it. But I don't think the game makes that very clear when it's time to choose.





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