1. I meant the Legion and EDI that were cooperating with organics. There would've been no Legion (the platform was made to contact Shepard after Sovereign attack) and no EDI (the rogue VI/AI from Luna was made what it is through Sovereign hardware) without Sovereign.
2. Resources are not the only reason for conflict. There can be all kinds of conflicts. Social issues, geth plans, organic plans...
3. For one, it needs to be for organics as well. Otherwise, Reaper guidance won't mean anything if organics attack synthetics out of fear or prejudice. Next, not all synthetics view the Reapers as gods. Even the geth were split about it. Heretics worshiped the Reapers, true geth did not.
4. Resurrecting "meat and tubes" to full operation. All while retaining all memories, experience. It is never explained in the universe, was never hinted at. Space magic at its finest. The Thorian was a huge plant that controlled minds through spores (which, funnily enough, didn't affect Shepard and his crew) and cloned green asari out of its ass/mouth in a matter of seconds.
This makes no sense IMO. If you can accept BS at some point, you should be willing to accept it at any other point. It's how high the bar is set for the series. And Synthesis is actually optional, unlike those other instances.
I'm not sure where you got that percentage. Probably from the time before Extended Cut.
1. so its the "advancement" so i agree.
2. Yes resources are. Look at any war. The Geth planned to honor Legions arrangement so there would be no conflict from their collective decision.
3. Organics don't matter as its the Synthetics that are the treat of wiping out all organics so it is them that require the guidance. The conflict only came from the goals. The true Geth didn't believe in the extinction of Organics. But the true Geth did believe in following suit in creating their very own Reaper construct. So if the Reapers were there to Guide and not incite war or a belief then its more than likely there will be no conflict as it will be giving knowledge to help advancement not just handing out orders. big difference.
4. The cloned body parts could have been attached to the "meat and tubes." The brain was intact so why would memories not be there? The Thorian spores may take a certain time to take effect and the team already there had been there significantly longer than Shepards team right?
Wiki: "As ExoGeni watched, it took less than a month for 80% of Zhu's Hope's inhabitants to become infected and begin performing tasks for the Thorian."
And the clone out of it's ass:
Wiki: "However, Saren Arterius had learned of the Thorian's existence and its connection to the Protheans. He traveled to Feros in secret with a contingent of geth and a powerful asari biotic, Shiala. He went to the Thorian and negotiated a trade, offering Shiala as a sacrifice. Shiala melded with the Thorian; sharing the Thorian's consciousness gave Shiala the Cipher, which Shiala then transferred to Saren's mind."
"In response to Shepard's approach, the Thorian produced a clone of Shiala to speak for it. Through the clone, the Thorian, referring to itself as the 'Old Growth', commanded Shepard to be in awe, saying every step the squad took was a transgression."
So it seemed to make sense. Nothing actually sounded illogical or went against itself.
Not like Preserving Organics but in essence you are really killing them and not preserving any essence of any individual organic or any collective feature that makes them organic.
Wiki: "EDI suggests that the Collectors were 'facilitating Reaper reproduction' by constructing a new Reaper, and also estimated that the Collectors would have to gather millions of humans in order to complete it. EDI speculates that every Reaper is built to resemble the race used to create it, and that the Reapers had unsuccessfully attempted to construct a Reaper from Prothean raw material."
Transforming not preserving lol